STR-realigner

STRrealigner
STR-realigner is a Java program that extracts and realigns sequence reads in input SAM/BAM file around prespecified short tandem repeat regions. Realigned sequence reads are saved as SAM/BAM format and used for variant calling with existing STR callers.

ソフトウェア
https://github.com/kanamekojima/STR-realigner