{"id":1489,"date":"2015-11-18T15:12:59","date_gmt":"2015-11-18T06:12:59","guid":{"rendered":"http:\/\/nagasakilab.csml.org\/en\/?page_id=1489"},"modified":"2017-08-28T16:25:46","modified_gmt":"2017-08-28T07:25:46","slug":"ijgvd","status":"publish","type":"page","link":"https:\/\/nagasakilab.csml.org\/en\/ijgvd","title":{"rendered":"iJGVD"},"content":{"rendered":"<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-1490 size-full\" src=\"http:\/\/nagasakilab.csml.org\/en\/wp-content\/uploads\/2015\/11\/cropped-headerB11.png\" alt=\"cropped-headerB11\" width=\"688\" height=\"76\" srcset=\"https:\/\/nagasakilab.csml.org\/en\/wp-content\/uploads\/2015\/11\/cropped-headerB11.png 688w, https:\/\/nagasakilab.csml.org\/en\/wp-content\/uploads\/2015\/11\/cropped-headerB11-300x33.png 300w, https:\/\/nagasakilab.csml.org\/en\/wp-content\/uploads\/2015\/11\/cropped-headerB11-500x55.png 500w\" sizes=\"auto, (max-width: 688px) 100vw, 688px\" \/><\/p>\n<p>Integrative Japanese Genome Variation Database (iJGVD;&nbsp;<a href=\"http:\/\/ijgvd.megabank.tohoku.ac.jp\/\">http:\/\/ijgvd.megabank.tohoku.ac.jp\/<\/a>) provides data of genomic variations obtained by whole-genome sequencing of Japanese individuals who participate the genome cohort study of ToMMo. &nbsp;The current release provides SNV frequency data obtained from the 1070 individuals. The first release contains data of about 4,300,000 SNVs selected by the criteria: (1) they are on autosomes, (2) they exist at least 5.0 % frequency in the 1070 individuals, and (3) they have been reported in dbSNP138.<\/p>\n<p>&nbsp;<\/p>\n<p>Citation<br \/>\nPlease cite the following manuscript related to this database:<\/p>\n<hr>\n<p>Yumi Yamaguchi-Kabata, Naoki Nariai, Yosuke Kawai, Yukuto Sato, Kaname Kojima, Minoru Tateno, Fumiki Katsuoka, Jun Yasuda, Masayuki Yamamoto &amp; Masao Nagasaki,<br \/>\niJGVD: an integrative Japanese genome variation database based on whole-genome sequencing<br \/>\nHuman Genome Variation 2: Article number: 15050 10.1038\/hgv.2015.50 (26\/Nov\/2015)<\/p>\n<p><a href=\"http:\/\/www.nature.com\/articles\/hgv201550\">http:\/\/www.nature.com\/articles\/hgv201550<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Integrative Japanese Genome Variation Database (iJGVD;&nbsp;http:\/\/ijgvd.megabank.tohoku.ac.jp\/) provides data of genomic variations obtained by whole-genome sequencing of Japanese individuals who participate the genome cohort study of ToMMo. &nbsp;The current release provides SNV frequency data obtained from the 1070 individuals. The first &hellip; <a href=\"https:\/\/nagasakilab.csml.org\/en\/ijgvd\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"passster_activate_protection":false,"passster_protect_child_pages":"","passster_protection_type":"password","passster_password":"","passster_activate_overwrite_defaults":"","passster_headline":"","passster_instruction":"","passster_placeholder":"","passster_button":"","passster_id":"","passster_activate_misc_settings":"","passster_redirect_url":"","passster_hide":"no","passster_area_shortcode":"","footnotes":""},"class_list":["post-1489","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages\/1489","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/comments?post=1489"}],"version-history":[{"count":5,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages\/1489\/revisions"}],"predecessor-version":[{"id":1863,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages\/1489\/revisions\/1863"}],"wp:attachment":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/media?parent=1489"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}