{"id":1772,"date":"2017-01-27T15:46:58","date_gmt":"2017-01-27T06:46:58","guid":{"rendered":"http:\/\/nagasakilab.csml.org\/en\/?page_id=1772"},"modified":"2017-01-27T15:46:58","modified_gmt":"2017-01-27T06:46:58","slug":"str-realigner","status":"publish","type":"page","link":"https:\/\/nagasakilab.csml.org\/en\/str-realigner","title":{"rendered":"STR-realigner"},"content":{"rendered":"<p><strong><span class=\"il\">STR<\/span>&#8211;<wbr><span class=\"il\">realigner<br \/>\n<\/span><\/strong>STR-realigner is a Java program that extracts and realigns sequence reads in input SAM\/BAM file around prespecified short tandem repeat regions. Realigned sequence reads are saved as SAM\/BAM format and used for variant calling with existing STR callers.<\/p>\n<p><strong>Software<\/strong><br \/>\n<a href=\"https:\/\/github.com\/kanamekojima\/STR-realigner\">https:\/\/github.com\/kanamekojima\/STR-realigner<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>STR&#8211;realigner STR-realigner is a Java program that extracts and realigns sequence reads in input SAM\/BAM file around prespecified short tandem repeat regions. Realigned sequence reads are saved as SAM\/BAM format and used for variant calling with existing STR callers. Software &hellip; <a href=\"https:\/\/nagasakilab.csml.org\/en\/str-realigner\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"passster_activate_protection":false,"passster_protect_child_pages":"","passster_protection_type":"password","passster_password":"","passster_activate_overwrite_defaults":"","passster_headline":"","passster_instruction":"","passster_placeholder":"","passster_button":"","passster_id":"","passster_activate_misc_settings":"","passster_redirect_url":"","passster_hide":"no","passster_area_shortcode":"","footnotes":""},"class_list":["post-1772","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages\/1772","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/comments?post=1772"}],"version-history":[{"count":1,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages\/1772\/revisions"}],"predecessor-version":[{"id":1773,"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/pages\/1772\/revisions\/1773"}],"wp:attachment":[{"href":"https:\/\/nagasakilab.csml.org\/en\/wp-json\/wp\/v2\/media?parent=1772"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}