{"id":1664,"date":"2014-02-23T19:21:01","date_gmt":"2014-02-23T10:21:01","guid":{"rendered":"http:\/\/nagasakilab.csml.org\/ja\/?page_id=1664"},"modified":"2014-02-27T16:35:40","modified_gmt":"2014-02-27T07:35:40","slug":"kaname_kojima","status":"publish","type":"page","link":"https:\/\/nagasakilab.csml.org\/ja\/kaname_kojima","title":{"rendered":"Kaname Kojima"},"content":{"rendered":"

\"kojima_nopic_850\"Kaname Kojima Ph. D.<\/strong><\/h1>\n

Assistant Professor<\/p>\n

Division of Biomedical Information Analysis,
\nDepartment of Integrative Genomics, Tohoku Medical Megabank Organization,
\nTohoku University
\n(Nagasaki Lab.)<\/p>\n

8F #West, IDAC Research Building\u00a0Tohoku University
\n4-1 Seiryo-machi, Aoba-ku, Sendai-shi, Miyagi 980-8575, JAPAN
\nTel&Fax\uff1a+81-22-273-6051<\/p>\n

Phone & Fax: +81-22-795-5856.<\/p>\n

E-mail: kojima [at] megabank [dot] tohoku [dot] ac [dot] jp<\/p>\n

\n

Research Interests<\/strong><\/strong><\/p>\n

<\/strong><\/strong>machine learning, artificial intelligence, genome data analysis<\/p>\n

Educational Background<\/strong><\/strong>
\n2011 Ph. D. in\u00a0Information Science and Technology, University of Tokyo
\n2008 Master of Science (Computer Science), University of Tokyo
\n2005 Bachelor of Engineering (Computer Science), Tokyo Institute of Technology<\/p>\n

Publications<\/strong><\/p>\n

Journal papers and refereed proceedings (peer reviewed)<\/p>\n

[15] Kojima, K.<\/b>, Nariai, N., Mimori, T., Takahashi, M., Yamaguchi-Kabata, Y., Sato, Y. Nagasaki, M.
\nA statistical variant calling approach from pedigree information and local haplotyping with phase informative reads,
\nBioinformatics 29 (22), 2835-2843<\/p>\n

[14] Fujita, A., Severino, P., Kojima, K.<\/b>, Sato, J.R., Patriota, A.G., Miyano, S., Functional clustering of time series gene expression data by Granger causality, BMC Systems Biology 2012, 6:137, 2012.<\/p>\n

[13] Kojima, K.<\/b>, Imoto, S., Yamaguchi, R., Fujita, A., Yamauchi, M., Gotoh, N., Miyano, S., Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing, BMC Genomics, 13(Suppl 1):S6, 2012. (Special Issue of The 10th Asia-Pacific Bioinformatics Conference)<\/p>\n

[12] Imoto, S., Kojima, K.<\/b>, Perrier, E., Tamada, Y., Miyano, S. Searching optimal Bayesian network structure on constraint search space: super-structure approach, Lecture Notes in Computer Science, Sprigner-Verlag, 6797, 210-218, 2010. (Special Issue of International Workshop on Advanced Methodologies for Bayesian Networks)<\/p>\n

[11] Higashigaki, T.*, Kojima, K.<\/b>*, Yamaguchi, R., Inoue, M., Imoto, S, Miyano, S., Identifying Hidden Confounders in Gene Networks by Bayesian Networks, Proceedings of 10th International Conference on Bioinformatics and Bioengineering. 168-173, 2010 (*equal contributors).<\/p>\n

[10] Kojima, K.<\/b>, Perrier, E., Imoto, S., Miyano, S. Optimal search on clustered structural constraint for learning Bayesian network structure. Journal of Machine Learning Research, 11:285-310, 2010.<\/p>\n

[9] Fujita, A., Sato, J.R., Kojima, K.<\/b>, Gomes, L.R., Nagasaki, M., Sogayar, M.C., Miyano, S. Identification of Granger causality between gene sets, Journal of Bioinformatics and Computational Biology, 8(4): 679-701, 2010.<\/p>\n

[8] Kojima, K.<\/b>, Nagasaki, M., Miyano, S. An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information, BMC Bioinformatics, 11:335, 2010.<\/p>\n

[7] Kojima, K.<\/b>, Imoto, S., Nagasaki, M., Miyano, S. Gene network clustering for graph layout based on microarray gene expression data, Genome Informatics, 24: 84-95, 2010. (Special Issue of The 10th Annual International Workshop on Bioinformatics and Systems Biology)<\/p>\n

[6] Kojima, K.<\/b>, Yamaguchi, R., Imoto, S., Yamauchi, M., Nagasaki, M., Yoshida, R., Shimamura, T., Ueno, K., Higuchi, T., Gotoh, N., Miyano, S. A state space representation of VAR models with sparse learning for dynamic gene networks, Genome Informatics, 22: 56-68, 2009. (Special Issue of The 9th Annual International Workshop on Bioinformatics and Systems Biology)<\/p>\n

[5] Hashimoto, T.B., Nagasaki, M., Kojima, K.<\/b>, Miyano, S. BFL: a node and edge betweenness based fast layout algorithm for large scale networks, BMC Bioinformatics, 10:19, 2009.<\/p>\n

[4] Kojima, K.<\/b>, Fujita, A., Shimamura, T., Imoto, S., Miyano, S. Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data, Genome Informatics, 20: 37-51, 2008. (Special Issue of The 8th Annual International Workshop on Bioinformatics and Systems Biology)<\/p>\n

[3] Kojima, K.<\/b>, Nagasaki, M., Miyano, S. Fast grid layout algorithm for biological networks with sweep calculation, Bioinformatics, 24(12): 1426-1432, 2008.<\/p>\n

[2] Kojima, K.<\/b>, Nagasaki, M., Jeong, E., Kato, M., Miyano, S. An efficient grid layout algorithm for biological networks utilizing various biological attributes, BMC Bioinformatics, 8:76, 2007.<\/p>\n

[1] Iwano,K., Kojima, K.<\/b>, Furui, S., A weight estimation method using LDA for multi-band speech recognition, INTERSPEECH(ICSLP), 2534-2537, 2006.<\/p>\n","protected":false},"excerpt":{"rendered":"

Kaname Kojima Ph. D. Assistant Professor … \u7d9a\u304d\u3092\u8aad\u3080 →<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1664","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/pages\/1664","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/comments?post=1664"}],"version-history":[{"count":6,"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/pages\/1664\/revisions"}],"predecessor-version":[{"id":1740,"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/pages\/1664\/revisions\/1740"}],"wp:attachment":[{"href":"https:\/\/nagasakilab.csml.org\/ja\/wp-json\/wp\/v2\/media?parent=1664"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}