{"id":3002,"date":"2015-07-06T17:26:31","date_gmt":"2015-07-06T08:26:31","guid":{"rendered":"http:\/\/nagasakilab.csml.org\/ja\/?page_id=3002"},"modified":"2015-07-17T11:17:55","modified_gmt":"2015-07-17T02:17:55","slug":"shibata","status":"publish","type":"page","link":"https:\/\/nagasakilab.csml.org\/ja\/shibata","title":{"rendered":"Tomoko F. Shibata"},"content":{"rendered":"

\u001b\"DSC_6980_shibata_wide_600\"<\/p>\n

Tomoko F. Shibata, Ph. D.<\/h2>\n

Assistant Professor<\/p>\n

Division of Biomedical Information Analysis,
\nDepartment of Integrative Genomics, Tohoku Medical Megabank Organization,
\nTohoku University<\/p>\n

Address: 4F Tohoku Medical Megabank Building, Tohoku University
\n2-1 Seiryo, Aoba, Sendai\u00a0 980-8573, Japan<\/p>\n

E-mail: tshibata <at> megabank.tohoku.ac.jp<\/p>\n

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<\/h3>\n

Work History<\/h3>\n
\n

 <\/p>\n

April 2015- Assistant Professor, Tohoku Medical Megabank Organization, Tohoku University<\/p>\n

Jan. 2012- March 2015 Postdoctoral Fellow, National Institute of Basic Biology<\/p>\n

April 2011-Dec. 2011 Visiting Researcher, Yokohama City University<\/p>\n

May 2010-Dec. 2010 Postdoctoral Fellow, Department of Biology, University of Miami<\/p>\n

April 2008-March 2010 Research Fellow, Misaki Marine Biological Station, the University of Tokyo<\/p>\n

April 2006-March 2008 Research Fellow of JSPS (DC2)<\/p>\n

 <\/p>\n

Education<\/h3>\n
\n

 <\/p>\n

March 2009 Ph. D., Department of Biological Science, Graduate School of Science, the University of Tokyo<\/p>\n

March 2003 Master\u2019s degree, Department of Earth and Planetary Science, Graduate School of Science, the University of Tokyo<\/p>\n

March 2001 Bachelor\u2019s degree,\u00a0 Department of Geology, the University of Tokyo<\/p>\n

 <\/p>\n

Awards<\/h3>\n
\n

 <\/p>\n

April 2014 Best Poster Award in Cold Spring Harbor Asia Conference on Genome Assisted Biology of Crops and Model Plant Systems<\/p>\n

Sep. 2010 Encouragement Award for Young Women Scientists (OM Award) from Zoological Society of Japan<\/p>\n

Sep. 2009 Zoological Science Award and Fujii Award for the paper,\u00a0 “Development and Growth of the Feather Star Oxycomanthus japonicus<\/i> to Sexual Maturity”,\u00a0 Zoological Science 25: 1075-1083, 2008<\/p>\n

Jan. 2004 Best Presentation Award in Conference on Lipid Messenger Signaling<\/p>\n

 <\/p>\n

Publications<\/h3>\n
\n

 <\/p>\n

Original Articles<\/strong><\/p>\n

\u30fb Oleg Gusev, Yoshitaka Suetsugu, Richard Cornette, Takeshi Kawashima, Maria D. Logacheva, Alexey S. Kondrashov, Aleksey A. Penin, Rie Hatanaka, Shingo Kikuta, Sachiko Shimura, Hiroyuki Kanamori, Yuichi Katayose, Takashi Matsumoto, Elena Shagimardanova, Dmitry Alexeev, Vadim Govorun, Jennifer Wisecaver, Alexander Mikheyev, Ryo Koyanagi, Manabu Fujie, Tomoaki Nishiyama, Shuji Shigenobu, Tomoko F. Shibata, Veronika Golygina, Mitsuyasu Hasebe, Takashi Okuda, Nori Satoh, Takahiro Kikawada. Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge. Nature Communications, 5:4784, 2014<\/p>\n

\u30fbKazutaka Takeshita**, Tomoko F. Shibata**, Naruo Nikoh, Tomoaki Nishiyama, Mitsuyasu Hasebe, Takema Fukatsu, Shuji Shigenobu, and Yoshitomo Kikuchi. Whole-Genome Sequence of Burkholderia<\/i> sp. Strain RPE67, Bacterial Gut Symbiont of the Bean Bug Riptortus Pedestris. Genome Announcements, 2: e00556-14, 2014.\u00a0**: Co-first authors<\/p>\n

\u30fbYoshikazu Furuta, Hiroe Namba-Fukuyo, Tomoko F. Shibata, Tomoaki Nishiyama, Shuji Shigenobu, Yutaka Suzuki, Sumio Sugano, Mitsuyasu Hasebe, Ichizo Kobayashi. Methylome diversification through changes in DNA methyltransferase sequence specificity. PLOS Genetics, 10:e1004272, 2014<\/p>\n

\u30fbTomoko F. Shibata, Taro Maeda, Naruo Nikoh, Katsushi Yamaguchi, Kenshiro Oshima, Masahira Hattori, Tomoaki Nishiyama, Mitsuyasu Hasebe, Takema Fukatsu, Yoshitomo Kikuchi, Shuji Shigenobu. Complete genome sequence of Burkholderia<\/i> sp. strain RPE64, bacterial symbiont of the bean bug Riptortus pedestris<\/i>. Genome Announcements, 1:e00441-13. 2013<\/p>\n

\u30fbRyo Matsumoto, Tomoko F. Shibata, Hisanori Kohtsuka, Mamoru Sekifuji, Natsuko Sugii, Hiroaki Nakajima, Noriaki Kojima, Yuki Fujii, Sarkar M.A. Kawsar, Hidetaro Yasumitsu, Jiharu Hamako, Taei Matsui and Yasuhiro Ozeki. Glycomics of a novel type-2 N-acetyllactosamine-specific lectin purified from the feather star, Oxycomanthus japonicus <\/i>(Pelmatozoa: Crinoidea). Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 158: 266-273. 2011<\/p>\n

\u30fbTomoko F. Shibata*, Tatsuo Oji, Koji Akasaka, and Kiyokazu Agata. Staging of regeneration process of an arm of the feather star Oxycomanthus japonicus <\/i>focusing on the oral-aboral boundary. Developmental Dynamics, 239: 2947\u20132961. 2010. *Corresponding author<\/p>\n

\u30fbTomoko F. Shibata*, Atsuko Sato, Tatsuo Oji and Koji Akasaka. Development and growth of the feather star Oxycomanthus japonicus<\/i> to sexual maturity.\u3000Zoological Science, 25: 1075\u20131083. 2008.\u00a0 *Corresponding author<\/p>\n

\u30fbTomoko F. Shibata* & Tatsuo Oji.\u00a0 Kiimetra miocenica<\/i>, a new genus and species of the family Calometridae (Echinodermata, Crinoidea) from the Middle Miocene of southwestern Japan.\u00a0 Journal of Paleontology, 81: 397-404. 2007. *Corresponding author<\/p>\n

\u30fb Tomoko F. Shibata* & Tatsuo Oji. Autotomy and arm number increase in Oxycomanthus japonicus<\/i> (Echinodermata, Crinoidea). Invertebrate Biology, 122: 375-379. 2003. *Corresponding author<\/p>\n

Books<\/strong><\/p>\n

\u30fb\u67f4\u7530\u670b\u5b50\u30fb\u7b20\u539f\u96c5\u5f18\u30fb\u91cd\u4fe1\u79c0\u6cbb\u30fb\u897f\u5c71\u667a\u660e\u30fb\u9577\u8c37\u90e8\u5149\u6cf0. \u4e00\u5206\u5b50\u30b7\u30fc\u30af\u30a8\u30f3\u30b5\u30fc\u3092\u7528\u3044\u305f\u975e\u30e2\u30c7\u30eb\u751f\u7269\u306ede novo\u30b2\u30ce\u30e0\u89e3\u8aad. \u6797\u5d0e\u826f\u82f1\u76e3\u4fee, \u4f0a\u85e4\u660c\u53ef\u30fb\u4f0a\u85e4\u6075\u7f8e\u7de8\u96c6\u300c\u6b21\u4e16\u4ee3\u30b7\u30fc\u30b1\u30f3\u30b5\u30fc\u6d3b\u7528\u8853\u3000\u30c8\u30c3\u30d7\u30e9\u30f3\u30ca\u30fc\u306e\u6700\u65b0\u7814\u7a76\u4e8b\u4f8b\u306b\u5b66\u3076\u300d\u5316\u5b66\u540c\u4eba. 2014<\/p>\n

\u30fb T. F. Shibata* & T. Oji. Post-larval ontogeny of Oxycomanthus japonicus (Crinoidea). In \u201cEchinoderms: M\u00fcnchen\u201d. Edited by T. Heinzeller and J.H. Nebelsick. 65-68, 2004. *Corresponding author<\/p>\n

\u30fbA. Sato, S. Amemiya, T.F.Shibata & T. Oji. Development of skeletal components in the larval stalk of the feather star Oxycomanthus japonicus. In \u201cEchinoderms: M\u00fcnchen\u201d, Edited by T. Heinzeller and J.H. Nebelsick. 61-64, 2004<\/p>\n

Others<\/strong><\/p>\n

\u30fb\u67f4\u7530 \u670b\u5b50. \u30cb\u30c3\u30dd\u30f3\u30a6\u30df\u30b7\u30c0\u306e\u767a\u751f\u3068\u9577\u671f\u98fc\u80b2. \u65e5\u672c\u52d5\u7269\u5b66\u4f1a\u30a6\u30a7\u30d6\u30b5\u30a4\u30c8<\/a>. 2009\u5e749\u6708<\/p>\n

\u30fbTomoko F. Shibata. Development and culture of feather stars. in CoralScience.org. June, 2009.<\/p>\n

 <\/p>\n

 <\/p>\n

 <\/p>\n","protected":false},"excerpt":{"rendered":"

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