Oral presentation

2016

2016/12/15-12/17 Two thousand Japanese whole genome reference panel and reference genome in ToMMo, Masao Nagasaki, 2016 Taiwan-Japan Joint Conference in Genetics and Genomics, 2016/12/15-12/17 16:00-16:40 College of Medicine, National Taiwan University

2016/8/26(Fri) 日本人ゲノムの多様性解析, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Kaname Kojima, Yumi Yamaguchi, Tomoko Shibata, Fumiki Katsuoka, Masayuki Yamamoto, Masao Nagasaki, 18th Annual Meeting of the Society of Evolutionary Studies, Japan, 2016/8/25-28, Tokyo Institute of Technology, Ookayama Campus

2016/7/15 (Fri) 秘密計算フィッシャー正確検定(1) ~標本数が少ない場合, Satoshi Hasegawa , Koki Hamada , Koji Chida , Soichi Ogishima , Kazuharu Misawa , Masao Nagasaki, The 74th Computer Security and the 19th Security Psychology & Trust Joint Study Conference, 2016/7/14-15, Nac

2016/07/15 (Fri) 秘密計算フィッシャー正確検定(2) ~標本数が少ない場合, Satoshi Hasegawa , Koki Hamada , Koji Chida , Soichi Ogishima , Kazuharu Misawa , Masao Nagasaki, The 74th Computer Security and the 19th Security Psychology & Trust Joint Study Conference, 2016/7/14-15, Nac

2016/7/15 (Fri) プライバシ保護ゲノム解析のための秘密計算フィッシャー正確検定, Satoshi Hasegawa , Koki Hamada , Koji Chida , Soichi Ogishima , Kazuharu Misawa , Masao Nagasaki,, The 74th Computer Security and the 19th Security Psychology & Trust Joint Study Conference, 2016/7/14-15, Nac

2016/7/15 (Fri) 13:15-13:45 Two thousand Japanese whole genome reference panel in Japan and Bioinformatics, Masao Nagasaki, NHRI-ToMMo Conference“Genomics, Biobanking, and Learning Health Systems” Panel 2 Genomics and Omics, 2016/7/15-16, Theater, School of Medicine Building 6, Tohoku University

2016/6/1(Wed) MiSeq システムを活用したヒト口腔細菌叢の変動性と個人識別性の解析, Yukuto Sato, Riu Yamashita, Junya Yamagishi, Natsuko Shinozaki, Akito Tsuboi, Masao Nagasaki, Illumina Genome Summit 2016, 2016/6/1, Tokyo Conference Center Shinagawa, Invited

2016/4/7(Thu) Whole-genome reference panel of Tohoku Medical Megabank Organization (ToMMo) and allele frequency of pathological variants, Yumi Yamaguchi, Yosuke Kawai, Kaname Kojima, Naoki Nariai, Yukuto Sato, Takahiro MImori, Fumiki Katsuoka, JunYasuda, Masayuki Yamamoto, Masao Nagasaki, The 13th International Congress of Human Genetics, 2016/4/3-7, Kyoto International Conference Center

2016/4/4(Mon) coalescentSTR: a statistical method that estimates repeat numbers for multiple samples from high-throughput sequencing data by considering coalescent theory, Kaname Kojima, Yosuke Kawai, Naoki Nariai, Takahiro Mimori, Takanori Hasegawa, Masao Nagasaki, The 13th International Congress of Human Genetics, 2016/4/3-7, Kyoto International Conference Center

2016/4/2(Sat) Two Thousand Whole-Genome Reference Panel and Towards Optimized Reference Genome in Japan, Masao Nagasaki, The Fourth Kyoto Symposium on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics 2016/4/1-2, Symposium Hall, International Science Innovation Building Kyoto University, Invited

2016/2/18(Thu)13:00-13:20 Towards Japanese Reference Genome Importance of Data Representation and Annotation, Masao Nagasaki, BIoHackerthon 2016, 2016/2/18, Tohoku Medical Megabank Organizatio, Tohoku University, Invited

2015

2015/11/7(Sat)15:00-17:00 ゲノムワイドなSNP解析からの日本人の遺伝的な集団構造 ~さらにゲノムコホート研究での日本人1070人の全ゲノム解析から見えつつあること~, Yumi Yamaguchi, Public lecture hosted by Research Subcommittee of the Japan Society of Human Genetics, 2015/11/7, Lecture Room1, Faculty of Science Bldg.2, The University of Tokyo, Tokyo Invited

2015/11/2(Mon)14:00-14:30 口腔細菌叢の日内変動性と歯科コホート研究デザインへの展望, Yukuto Sato, The 3rd Symposium and General Assembly of Japanese Consortium for Human Microbiome ~Enteric Bacteria and their Clinical Application 2015/11/2, Ookayama Campus, Tokyo Institute of Technology, Tokyo Invited

2015/10/16(Fri)12:30-13:20 SNPアレイデータの全ゲノムインピュテーション, Yosuke Kawai, The 60th Annual Meeting of the Japan Society of Human Genetics, 2015/10/15-17, Keio Plaza Hotel, Tokyo

2015/10/2(Fri)10:00-10:10 全ゲノム重複と脊椎動物の進化:比較ゲノム解析から見えてきた迅速なゲノム再編と遺伝子群欠失モデルの提起, Yukuto Sato, The 60th Annual Meeting of young Researchers Group for Computational/Omics/Systems Biology in Japan, 2015/10/1/-3, Tsuruoka Metabolome Campus Lecture Hall, Tsuruoka, Yamagata

2015/9/26(Sat)11:15-11:30 Haplotype関連解析の検出力のシミュレーション研究, Keiji Misawa, Yosuke Kawai, Kaname Kojima, Takanori Hasegawa, Masao Nagasaki, The 87th Annual Meeting of The Genetics Society of Japan, 2015/9/24-26, Kawauch-ikita campus, Tohoku University, Sendai, Miyagi

2015/9/24(Thu)10:30-10:45 Haplotype関連解析の検出力のシミュレーション研究, Yosuke Kawai, Naoki Nariai, Kaname Kojima, Yumi Yamaguchi, Yukuto Sato, Takahiro Mimori, Masao Nagasaki, The 87th Annual Meeting of The Genetics Society of Japan, 2015/9/24-26, Kawauchi-kita campus, Tohoku University, Sendai, Miyagi

2015/9/24(Thu)10:45-11:00 日本人1070人の全ゲノム解析に基づく疾患変異の頻度推定, Yumi Yamaguchi, Yosuke Kawai, Kaname Kojima, Yukuto Sato, Masao Nagasaki, The 87th Annual Meeting of The Genetics Society of Japan, 2015/9/24-26, Kawauch-ikita campus, Tohoku University, Sendai, Miyagi

2015/7/31(Fri)17:00-18:00 ジャポニカアレイ®と東北メディカル・メガバンク機構の全ゲノムリファレンスパネル活用, Masao Nagasaki, セミナー「ジャポニカアレイ®と東北メディカル・メガバンク機構の全ゲノムリファレンスパネル活用」, 2015/7/31, Multimedia Hall, 1st floor, Center of Medical Innovation and Translational Research, Osaka University, Osaka

2015/7/2(Thu) 13:15-14:45 ヒト口腔細菌叢における日内および年間の変動性, Yukuto Sato, Next Generation Sequencing Field 4th Meeting, 2015/7/1-3, Tsukuba International Congress Center, Tsukuba, Ibaraki Invited

2015/7/2(Thu) 15:00-16:30東北メディカル・メガバンク計画の全ゲノムリファレンスパネルの構築と今後, Masao Nagasaki, Next Generation Sequencing Field 4th Meeting, 2015/7/1-3, Tsukuba International Congress Center, Tsukuba,Ibaraki  Invited

2015/6/9 Short tandem repeat number estimation from paired-end sequence reads by considering unobserved genealogy of multiple individuals, Kaname Kojima, 11th International Symposium on Bioinformatics Research and Applications (ISBRA)2015, 2015/6/7-10, Old Dominion University Card Center, Virginia, USA

2015/5/20(Wed) Thousands Japanese Whole Genome Reference Panel and Bioinformatics in ToMMo, Masao Nagasaki, The 11th International Workshop on Advanced Genomics 2015/5/20-22, Hitotsubashi Hall, Tokyo, JAPAN, Invited

2015/03/22 (Sun) 歯垢を中心とした口腔内細菌叢解析の基盤整備, Riu Yamashita, Yukuto Sato, Junya Yamagishi, Natsuko Shinozaki, Masao Nagasaki, Akito Tsuboi, 9th Annual Meeting of the Society of Genome Microbiology, Japan, 2015/03/06-08, KOBE University Centennial Hall

2014

Presented day (day of the week), title, author list (presenter with underline),conference name, session name (chair name), conference days (include day of the week), location (address), invited or not (extra website of the conference)

2014/11/9 (Sun) 10:20-10:40, Introduction to the Tohoku Medical Megabank Organization and What is Happening in the Human Reference Genome?, Masao Nagasaki, Biohackaton 2014, Introduction from Organizers (Chair: Katayama Toshiaki), 2014/11/9 (Sun), Main hall in bldg of Tohoku Medical Megabank Organization (2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, JAPAN 980-8573), Organizers Talk

2014/11/8 (Sat) 15:05-15:30, Data management and bioinformatics of thousands Japanese whole-genome project, Masao Nagasaki, Karolinska-Tohoku Joint Symposium on Medical Sciences, Session I Clinical Application and Management of Biobanks (Chair Masayuki Yamamoto), 2014/11/8 (Sat), Conference room A (339) in Bldg of Tohoku Medical Megabank Organization (2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, JAPAN 980-8573), Invited

2014/10/3 (Fri) 17:00-17:25、Japonica Array wo Mochiita Giji Full Sequence Service no Yuyousei to Imputation no Kanousei (in Japanese) (in English; Utilization of semi-full sequencing service and the possibility of Imputation technology、Masao Nagasaki、3rd Information in Biology, Medicine and Pharmacology、2W6 Center of Innovation Tohoku Kyoten no Mezasu Syakai (in Japanese) (in English; Center of Innovation: Reconstruction and Future in Tohoku)(Chair Takuzo Takayama、Yasuhisa Nemoto)、2014/10/3 (Fri)、Sendai International Center Tachibana(Aobayama, Aobaku, Sendaishi, Miyagi, Japan)、Invited

2014/10/3 (Fri) 10:50-11:05、Tohoku Medical Megabank ni Okeru Personal Genome no Rikatuyou no Security Policy (in Japanese) (in English; Security policy for the utilization of person genome information in Tohoku Medical Megabank Organization)、Masao Nagasaki、3rd Information in Biology, Medicine and Pharmacology、2K2 Personal Genome no Rikatuyou to Privary Hogo 2 (in Japanese) (in English; Utilization of Personal Genome and Primary Protection (2)) (Chair Soichi Ogishima)、2014/10/3 (Fri)、Sendai International center Small Conference Room 5(Aobayama, Aobaku, Sendaishi, Miyagi, Japan)、Invited

2014/9/19(Fri) 16:09-16:34、Tohoku Medigal Megabank Kikou ni okeru Genome Jouhou Kiban no Kouchiku to Jyouhou Kaiseki (in English; The infrastructure of the genome data processing and analysis in Tohoku Medical Megabank Organization)、Masao Nagasaki、86th Annual Meeting of the Genetic Society of Japan、WS16 Novel approach from/to Genetics in the big genome data era (Chair Atsushi Ogura)、2014/9/19(Fri)、Nagahama Institute of Bio-Science and Technology Conference Room C(Middle Lecture Room 2)(1266, Tamura-cho, Nagahama, Shiga, Japan)、Invited http://gsj3.jp/taikai/86taikai/

2014/9/16(Tue)14:25-15:10、Tohoku Medical Megabank Kikou no Daikibo Genome Cohort and Keisan Inhura (in Japanese) (in English; Large-scale genome cohort in Tohoku Medical Megabank Organization and Supercomputer)、Masao Nagasaki、Sin-Seimeikagaku bunya kaitaku to supercomputer “kei” (in Japanese) (in English; Towards new life science and supercomputer kei)(Chair Satoru Kuhara)、2014/9/16(Tue)、The Kyushu University School of Medicine Centennial Hall(3-1-1, Maidai, Higashi-ku, Fukuoka, Japan)、Invited http://www.agr.kyushu-u.ac.jp/sympk/

2014/8/22(Fri)15:30-16:40、Hito Zengenomu Kaiseki to Bigdata Kobetuka Iryou (in Japanese) (in English; Human Whole-genome Sequencing and the Personalized Medicine with Bigdata) 、Yobou no Kiban Kouchiku (in Japanese) Infrastructure for preventive medicine、Masao Nagasaki、Japan Electronics and Information Technology Industries Association(Chair Toru Tanaka)、2014/8/22(Fri)、Meeting room (339) in bldg of Tohoku Medical Megabank Organization (2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, JAPAN 980-8573)、Invited

2014/7/7(Mon) 12:55-13:45、Iryou Jyouhou to Iden Jyouhou wo Syuuseki site Kobetuka Iryou wo Jitugen (in Japanese) (in English; Gather medical and genome information to achieve the personalized medicine)、Masao Nagasaki、Iryou Big data summit (in Japanese) (in English; Medical Bigdata Summit)、2014/7/7(Mon)、Sola City Conference Center(4-6, Surugadai,Kanda,Chiyoda-ku,Tokyo,Japan), Invited http://techon.nikkeibp.co.jp/article/SEMINAR/20140515/352080/

2014/05/25(Sun) 9:00-9:30、Hito Zengenomu Kaiseki to Big data (in Japanese) (in English; Whole human genome data analysis and bigdata)、Masao Nagasaki、The Japan Society for Analytical Chemistry 74th Japan Society for Analytical Chemistry、Main Subject 5 Fukuzatu,Aimai,Mourasei ni chousensuru seimeibunsekikagaku (in Japanese) (in English;Challenging to complex, ambiguous, completeness in Analytical Chemistry)(Chair Tomoyuki Ooe)、2014/5/24(Sat)-25(Sun)、College of Engineering, Nihon University D Conference Room(Nakagawara 1,Sokusada, Tamura-cho, Koriyama-shi, Fukushima, Japan), Invited

2014/03/9(Sun) 13:00-14:48、Sikoukentai no hozon ondo oyobi hozon kikan niyoru saikinsou he no eikyou (in Japanese)、Natsuko Shinozaki, Junya Yamagishi, Yukuto Sato, Riu Yamashita, Takuji Yamada, Masao Nagasaki, Tsuboi Akito, 8th Annual Meeting of Society of Genome Microbiology、2014/3/7(Thu)-9(Sun)、Tokyo University of Agriculture Setagaya Campus(Sakuraga-oka 1-1-1, Setagaya-ku, Tokyo, Japan)、Invited

2014/02/18(Tue) 9:37-9:50、Sikou Siryou no Hozon Ondo oyobi Hozon-Kikan niyoru Saikinsou heno Eikyou (in Japanese)、Natsuko Shinozaki, Junya Yamagishi, Yukuto Sato, Riu Yamashita, Takuji Yamada, Masao Nagasaki, Akito Tsuboi, Young Researchers Group for Computational/Omics/Systems Biology in Japan (5th)、2014/2/18(Thu)、Kemigawa Seminor House of the University of Tokyo(Hanazono-cho,Hanamigawa-ku,Chiba-shi,Chiba)、Invited

2013

2013/12/16 iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data, Takahiro Mimori, Naoki Nariai, Kaname Kojima, Mamoru Takahashi, Akira Ono, Yukuto Sato, Yumi Yamaguchi-Kabata and Masao Nagasaki,
2013/12/16 16:00-16:20 Genome Informatics Workshop (GIW) 2013, Matrix Biopolis, National University of Singapore, Singapore

2013/11/29 Nihonjin Kousindo Zengenomu Sansyou panel no Insilico Kaiseki no Genjyo to Bioinformatics (in Japanese) (in English; Progress of Japanese whole high-coverage reference panel and its Bioinformatics), Masao Nagasaki, The 58th Annual Meeting of the Japan Society of Human Genetics,2013/11/29 9:00-10:50 Koyo Grand Hotel 4th Conference Room(Sinjyu)(2013/11/20(Wet)-23(Sat))

2013/10/31 Pedigree Caller: A statistical variant calling approach using phase informative reads and pedigree information, Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato and Masao Nagasaki, 2013/10/31 13:30-13:52 Session Chair Kazuharu Arakawa (Keio Univ.), Japanese Society of Bioinformatics (JSBi), Tower Hall Funahori (4-1-1, Funahori, Edogawa-ku, Tokyo, Japan)

2013/10/29 Kou Sindo Zengenome Sequencing Kaiseki no Genjyo to Kadai (in Japanese) (in English; Progress of high-converage Whole-genome sequencing and its future challenge, Masao Nagasaki, 2013/10/29 12:35-13:00, MKI Luncheon Seminar, Japanese Society of Bioinformatics (JSBi), 2013/10/29-31, Tower Hall Funahori (4-1-1, Funahori, Edogawa-ku, Tokyo, Japan), Invited

2013/10/29 Tohokujin 1000 nin genome keikaku kanren no in silico Kaiseki no Genjyou no Jyoukyou to Bioinformatics (in Japanese) (in English; Progress of 1000 Genome Sequencing in Tohoku region and its Bioinformatics, Masao Nagasaki,Organized Session by Tohoku Medical Megabank Organization, 2013/10/29 14:00-14:20, Japanese Society of Bioinformatics (JSBi), 2013/10/29-31, Tower Hall Funahori (4-1-1, Funahori, Edogawa-ku, Tokyo, Japan), Invited

2013/10/29 TIGAR: Transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference, Naoki Nariai, Osamu Hirose, Kaname Kojima, Kazuko Ueno and Masao Nagasaki, 2013/10/29 14:30-14:45, Japanese Society of Bioinformatics (JSBi), 2013/10/29-31, タワーホール舟堀 東京

2013/9/10 Towards thousands Japanese whole genome project and its data management and bioinformatics, Masao Nagasaki, Fukuoka International Symposium on Genomics & Epigenomics 2013, 2013/9/10(Tue) 10:05-10:40 Kyushu University Biomedical Research Station, Kyushu University Hospital Campus, Fukuoka, Japan (2013/9/10)

2013/6/28 Genome Explosion and its Data Management and Bioinformatics on Supercomputer: the Prospective Genome Cohort Study in Japan, Masao Nagasaki, The 2nd HD Physiology International Symposium 2013: Multi-Level Systems Biology, 2013/6/28 15:35-16:00, Marunouchi MY PLAZA HALL, Tokyo, Japan (2013/6/28-29) http://hd-physiology.jp/sympo2013/

2013/3/2 東北メディカル・メガバンクにおけるミトコンドリアゲノム解析基盤の構築、生命情報科学若手の会・第4回研究会、10:55-11:05 自然科学研究機構・岡崎コンファレンスセンター、岡崎、日本

2012

012/12/11 Data Management and Bioinformatics of High Throughput Sequencing Data on the Massive Parallel Supercomputer Environment and Future, Masao Nagasaki, Bilateral Workshop between Tohoku University and National Tsing Hua University, 11:00-12:00 Akiu Sendai Japan

2012/11/3 東北大学 東北メディカル・メガバンク機構の紹介、平成24年度第2回「創薬研究のためのデータベース講習会」、10:00-10:30 東北大学星陵地区IT教育施設 (医学部4号館6階)、仙台、日本

2012/10/16 ゲノムコホートとスーパーコンピュータ及びインシリコ解析戦略、生命医薬情報学連合大会スポンサーセッション、16:10-16:25 東京(タワーホール舟堀)、日本

2012/9/21 ゲノム超ビックデータ時代における次世代シークエンスデータ解析環境の構築と解析、化学工学会第44回秋季大会秋季大会シンポジウム「S-13 生物情報学を活かす次世代工学の提言」、東北大学 東北大学川内北キャンパス 萩ホール、日本 (予定) 招待講演

2012/5/30 エクソーム・トランスクリプトーム・全ゲノム解析に必要なスパコン計算リソース及び解析手法について、平成24年度 アジレントゲノミクスフォーラム、東京 招待講演

2012/4/26 スーパーコンピュータを用いた 超快適高速次世代シークエンスデータ解析環境の構築と解析、平成24年度 研究科シンポジウム 「実世界ビッグデータへの情報科学の挑戦」第一部:生命情報ビックバン時代の生命情報科学研究の基盤構築、11:40-12:00 東北大学・川内キャンパス・萩ホール、日本 Ref (予定) 招待講演

2011

2011/12/9 高性能シークエンサ大規模データのスーパコンピュータ上での 効率的な管理と解析環境の構築、第12回IPABシンポジウム~超並列スパコンとバイオ計算、2011年12月9日、東京(秋葉原)、日本 招待講演

2011/10/4 Data Management and Bioinformatics of Next Generation Sequencing Data on the Massive Parallel Supercomputer at Human Genome Center, Next Generation Sequencing Asia Congress 2011, Concorde Hotel, Singapore

2011/7/15 Data Management and Bioinformatics of Next Generation Sequencing Data on the Massive Parallel Supercomputer at Human Genome Center, 4th Symposium of the IMSUT & RCAST Global COE
”Cutting Edge of Human Genome Science, Tokyo (Shirokane campus)

2011/5/29 国際がんゲノムコンソーシアムプロジェクトを支えている東京大学医科学研究所ヒトゲノム解析センターのスーパーコンピューターと次世代シーケンサ解析 第1回NGS現場の会 熱海

2011/6/4 第11回東京大学生命科学シンポジウム スーパーコンピュータを用いた超快適高速次世代シーケンサデータ解析環境の構築 東京(東京大学 本郷キャンパス)