TIGAR

TIGER_

TIGAR
Transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference

Software
https://github.com/nariai/tigar2

Publication
TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata and Masao Nagasaki
BMC Genomics. 15(Suppl 10):S5 (2014)

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference
Naoki Nariai, Osamu Hirose, Kaname Kojima and Masao Nagasaki
Bioinformatics. 29(18):2292-2299 (2013)

 

Citation
Please cite the following manuscript related to this software:


TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata and Masao Nagasaki
BMC Genomics. 15(Suppl 10):S5 (2014)

 

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference
Naoki Nariai, Osamu Hirose, Kaname Kojima and Masao Nagasaki
Bioinformatics. 29(18):2292-2299 (2013)